Assessment of Escherichia coli Levels in Vjosa River using Standard Microbiological Indicators

First published: 24 June 2026 | https://doi.org/10.63871/unvl.jsuv2.1.41
Natural Science Section

Authors

Kerol Saçaj

Biology Department, Faculty of Technical & Natural Sciences, University “Ismail Qemali” Vlorë, Albania | ORCID ID: #


Etleva Hamzaraj

University of Tirana, Tirana, Albania | ORCID ID: https://orcid.org/0009-0000-6695-6783


Brikena Parllaku

University of Tirana, Tirana, Albania | ORCID ID: https://orcid.org/0000-0002-7340-0289


Selin Saçaj

University of Tirana, Tirana, Albania | ORCID ID: #


Abstract

The Vjosa River one of the few wilde large European rivers is increasingly exposed to human-driven pressures may put at risk its microbial quality. This study estimate the surface-water microbiological status of the Vjosa using Escherichia coli (E. coli) as a primary indicator of faecal contamination. Sampling was performed between October 2024 and October 2025 at 13 locations (seven on the main channel and six on tributaries) in accordance with ISO 19458 for water-quality microbiology. E. coli concentrations were determined by using the Most Probable Number (MPN) method following ISO 9308-1:2014. The results showed contamination in different areas of the river. Average E. coli levels resulted between Class I-II (slight to moderate pollution), yet the several sites repeatedly reached Class III levels (severe pollution), especially in the catchments of Sites 03, 11, 13, 15, and 16. These hotspots are ralated to sites impacted by untreated wastewater discharges, agricultural runoff, and animal activities. A strong positive correlation is between E. coli and intestinal enterococci confirmed that the contamination is originated from faecal sources. Vjosa River generally maintains a moderate microbiological quality, episodic episodes of intense faecal input create public-health concerns. High concentrations of E. coli, total and faecal coliforms, and enterococci render the water unsuitable for recreation or drinking. The study underscores the value of E. coli as a rapid proxy for overall microbial safety and recommends sustained monitoring together with improved catchment-area management to curb faecal pollution in the river’s surface waters. 

CONFLICT OF INTEREST

The authors declare no conflict of interest.

REFERENCES

Ahmed, W., Hamilton, K. A., Lobos, A., Hughes, B., Staley, C., Sadowsky, M. J., & Harwood, V. J. (2018). Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage. Environment International, 117, 243–249. American Public Health Association. (2017). Standard methods for the examination of water and wastewater (23rd ed.). Bartram, J., & Rees, G. (2000). Monitoring bathing waters: A practical guide to the design and implementation of assessments and monitoring programs. World Health Organization. Boehm, A. B., & Soller, J. A. (2019). Estimated health risks in recreational waters contaminated with fecal indicator bacteria. Environmental Science & Technology, 53(3), 1273–1284. Borrego, J., Andres, M. T., Gomez, J. L., & Ibanez, J. (2002). Genetic study of Malvasia and Torrontes groups through molecular markers. American Journal of Enology and Viticulture, 53, 125–130. Brunkard, J. M., Ailes, E., Roberts, V. A., Hill, V., Hilborn, E. D., Craun, G. F., Calderon, R. L., Beach, M. J., & Yoder, J. S. (2011). Surveillance for waterborne disease outbreaks associated with drinking water—United States, 2007–2008. MMWR Surveillance Summaries, 60(12), 38–68. Byamukama, D., Mach, R. L., Kansiime, F., Manafi, M., & Farnleitner, A. H. (2005). Discrimination of human and animal fecal contamination in a tropical watercourse using indicator bacteria and bacteriophages. Applied and Environmental Microbiology, 71(11), 6507–6514. https://doi.org/10.1128/AEM.71.11.65076514.2005 Coffey, R., Butcher, J., Benham, B., & Johnson, T. (2020). Modeling the effects of future hydroclimatic conditions on microbial water quality and management practices in two agricultural watersheds. Transactions of the ASABE, 63(3), 753770. https://doi.org/10.13031/trans.13653 Dassenakis, M., Scoullos, M., Angelidis, M., et al. (1998). Environmental impact of agricultural runoff in rivers of the Eastern Mediterranean. Environmental Geochemistry and Health, 20(1), 2745. Environmental Protection Agency. (2012). Method 1603: Escherichia coli in water by membrane filtration using modified m-TEC medium. European Commission. (2020). Bathing water directive 2006/7/EC implementation report. Publications Office of the European Union. European Environment Agency. (2018). Surface water quality and ecological status in Europe. Farnleitner, A. H., Ryzinska-Paier, G., Reischer, G. H., Burtscher, M. M., Knetsch, S., Kirschner, A. K. T., Dirnbo ck, T., Kuschnig, G., Mach, R. L., & Sommer, R. (2010). Escherichia coli and enterococci are sensitive and reliable indicators for human, livestock and wildlife faecal pollution in alpine mountainous water resources. Journal of Applied Microbiology, 109(5), 1599–1608. https://doi.org/10.1111/j.13652672.2010.04788.x Field, K. G., & Samadpour, M. (2007). Fecal source tracking in environmental waters. Environmental Microbiology, 9(1), 80–89.. 15. Haller, L., Amedegnato, E., Pote , J., & Wildi, W. (2009). Influence of freshwater sediment characteristics on persistence of fecal indicator bacteria. Water, Air, & Soil Pollution, 203(1–4), 217–227. https://doi.org/10.1007/s11270-009-0005-0 Hlavsa, M. C., Roberts, V. A., Kahler, A. M., Hilborn, E. D., Mecher, T. R., Beach, M. J., Wade, T. J., Yoder, J. S., & Centers for Disease Control and Prevention (CDC). (2015). Outbreaks of illness associated with recreational water—United States, 20112012. MMWR Morbidity and Mortality Weekly Report, 64(24), 668–672. International Organization for Standardization. (2006). ISO 19458: Water quality—Sampling for microbiological analysis.. International Organization for Standardization. (2014). ISO 9308-1: Water quality—Enumeration of Escherichia coli and coliform bacteria—Part 1: Membrane filtration method. Kay, D., Jones, F., Wyer, M. D., Fleisher, J. M., Salmon, R. L., Godfree, A. F., Zelenauch-Jacquotte, A., & Shore, R. (1994). Predicting likelihood of gastroenteritis from sea bathing: Results from randomised exposure. The Lancet, 344(8927), 905–909. https://doi.org/10.1016/S01406736(94)92267-5 Kavka, G. G., Kasimir, G. D., & Farnleitner, A. H. (2006). Microbiological water quality of the River Danube (km 2581–km 15): Longitudinal variation of pollution as determined by standard parameters. In Proceedings of the 36th International Conference of the International Association for Danube Research (IAD) (pp. 415–421). Austrian Committee for Danube Research/IAD. Leclerc, H., Mossel, D. A. A., Edberg, S. C., & Struijk, C. B. (2001). Advances in the bacteriology of the coliform group: Their suitability as markers of microbial water safety. Annual Review of Microbiology, 55, 201–234. McAllister, T. A., & Topp, E. (2012). Role of livestock in microbiological contamination of water: Commonly the blame, but not always the source. Animal Frontiers, 2(2), 17–27. McLellan, S. L., & Eren, A. M. (2014). Discovering new indicators of fecal pollution. Trends in Microbiology, 22(12), 697–706. https://doi.org/10.1016/j.tim.2014.08.002 Molina, M., Hunter, S., Cyterski, M., Peed, L. A., Kelty, C. A., Sivaganesan, M., Mooney, T., Prieto, L., & Shanks, O. C. (2014). Factors affecting the presence of human-associated and fecal indicator real-time quantitative PCR genetic markers in urban-impacted recreational beaches. Water Research, 64, 196–208. https://doi.org/10.1016/j.watres.2014.07.036 Pinto, A. J., Xi, C., & Raskin, L. (2012). Bacterial community structure in the drinking water microbiome is governed by filtration processes. Environmental Science & Technology, 46, 88518859. Psomas, A., Dagalaki, V., Panagopoulos, Y., Konsta, D., & Mimikou, M. (2016). Sustainable agricultural water management in Pinios River Basin using remote sensing and hydrologic modeling. Procedia Engineering, 162, 277–283. Reischer, G. H., Haider, J. M., Sommer, R., Stadler, H., Keiblinger, K. M., Hornek, R., et al. (2008). Quantitative microbial faecal source tracking with sampling guided by hydrological catchment dynamics. Environmental Microbiology, 10(10), 2598–2608. Sinton, L. W., Hall, C. H., Lynch, P. A., & Davies-Colley, R. J. (2002). Sunlight inactivation of fecal indicator bacteria and bacteriophages from waste stabilization pond effluent in fresh and saline waters. Applied and Environmental Microbiology, 68(3), 1122–1131. Ulanovsky, S., Gogorcena, Y., Toda, F. M., & Ortiz, J. M. (2002). Use of molecular markers in detection of synonymies and homonymies in grapevines (Vitis vinifera L.). Scientia Horticulturae, 92, 241254. 31. WHO. (2017). Guidelines for drinking-water quality (4th ed.). World Health Organization. Zhang, J., Zhu, Y., Wang, Y., Chen, X., Li, G., Cai, G., Xie, F., & Sun, Y. (2026). Distribution, driving factors and prediction of antibiotics in Asia largest river basin: Comprehensive insights of Yangtze River Basin, China. Emerging Contaminants, 12(1), 100624. Zhou, J., Wang, X. C., Ji, Z., et al. (2015). Source identification of bacterial and viral pathogens and their survival/fading in the process of wastewater treatment, reclamation, and environmental reuse. World Journal of Microbiology and Biotechnology, 31, 109-120.

Citing Literature

How to cite this article:

Saçaj, K., et al. DOI: 10.63871/unvl.jsuv2.1.41 UniVlora Scientific Journal 2026, no.II, volume I